Cheesecake is one of those sweet treats that can make any occasion feel special. It’s creamy, rich, and oh-so-delicious. During the times I’ve felt that irresistible craving, I realized that I wasn’t alone in wanting mini versions of this classic dessert. That’s why I created this post! I wanted to share some incredible cheesecake cupcakes recipes that are not only gluten-free but also packed with flavor. These mini desserts are perfect for satisfying your sweet tooth without overwhelming you with a full slice of cheesecake.
If you’re a fan of creamy cupcakes or just love experimenting with dessert recipes, you’re in for a treat. Whether you’re hosting a party, celebrating a special occasion, or simply indulging in a midweek snack, these cupcake ideas will delight you. I’ve gathered 17 cheesecake cupcake recipes that are easy to make and offer a variety of cheesecake variations. From classic flavors to seasonal delights, you’ll find something that tickles your taste buds in this collection.
Get ready to dive into these delightful desserts that not only satisfy your cravings but also impress your family and friends. Each recipe is designed to be simple yet scrumptious, allowing you to whip up a batch of mini cheesecake cupcakes that everyone will love. Let’s explore these sweet ideas together!
Key Takeaways
– You’ll discover 17 unique cheesecake cupcake recipes that cater to various tastes and preferences. Each recipe is gluten-free, making them accessible to more dessert lovers. – The recipes include a mix of classic and creative flavors, so whether you crave chocolate, fruit, or seasonal spices, there’s something for everyone. – These mini desserts are easy to make, allowing even beginner bakers to enjoy the process of creating delicious treats. – They are perfect for any occasion, whether it’s a birthday, holiday gathering, or just a cozy evening at home. – Each recipe offers practical tips and variations, empowering you to customize your cheesecake cupcakes to suit your style and preferences.1. Classic Gluten-Free Cheesecake Cupcakes

Craving something classic yet gluten-free? These cheesecake cupcakes capture that timeless cheesecake flavor perfectly! With a buttery graham cracker crust made from gluten-free crumbs, they are a delight for cheesecake enthusiasts.
Rich and creamy, these cupcakes melt in your mouth, making them ideal for gatherings or a cozy night in. They’re not just easy to prepare, but they also impress everyone who takes a bite.
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 1 teaspoon vanilla extract
– 3 large eggs
– ½ cup sour cream
Instructions:
1. Preheat your oven to 325°F (160°C). Line a muffin tin with cupcake liners.
2. In a bowl, mix the gluten-free graham cracker crumbs and melted butter until well combined.
3. Press the mixture into the bottom of each cupcake liner, forming a crust.
4. In a mixing bowl, beat the cream cheese and sugar until smooth.
5. Add vanilla, then mix in the eggs one at a time, followed by the sour cream.
6. Pour the cream cheese mixture over the crust in each liner.
7. Bake for 20 minutes, then cool completely before refrigerating for at least 2 hours.
FAQs:
– Can I use regular graham crackers? Yes, but they won’t be gluten-free.
– Can I make it dairy-free? Substitute cream cheese with a dairy-free alternative and use plant-based yogurt.
How To Choose Gluten-Free Cheesecake Cupcakes Ingredients
Choosing the right ingredients for your gluten-free cheesecake cupcakes can make a huge difference in flavor and texture. Follow these tips to ensure your mini desserts turn out creamy and delightful!1. Flour Type
When selecting flour for your gluten-free cheesecake cupcakes, opt for a blend of gluten-free flours like almond flour or coconut flour. These options offer a rich flavor and moisture. You can also find pre-made gluten-free flour blends that are designed for baking, which can simplify your process.
2. Sweetener
Choose your sweetener carefully. Granulated sugar works well for classic recipes, but you can also experiment with natural sweeteners like honey or maple syrup for a unique twist. If you’re watching your sugar intake, consider using stevia or erythritol. Just remember that different sweeteners have varying levels of sweetness, so adjust the quantity accordingly.
3. Cream Cheese
The quality of cream cheese is crucial for a creamy texture. Look for blocks of full-fat cream cheese instead of the spreadable kind, as it holds up better in baking. If you’re dairy-free, consider using a vegan cream cheese alternative, but check that it’s gluten-free as well.
4. Flavor Add-ins
Add flavor with ingredients like vanilla extract, lemon zest, or cocoa powder. Fresh fruit can also enhance your mini desserts. For instance, strawberries and blueberries pair perfectly with cheesecake flavors. Just make sure any flavorings you choose are gluten-free.
5. Baking Tools
Using the right baking tools is essential. Invest in quality cupcake liners, preferably silicone or parchment, which help prevent sticking. A good muffin tin and an electric mixer will make mixing your ingredients easier and ensure a smooth batter. Also, keep an eye on portion sizes; use a cookie scoop for even distribution.
6. Storage Options
After baking your cupcakes, consider how you will store them. Using airtight containers will keep them fresh longer, and freezing them is a great option if you want to make them ahead of time. Make sure to separate layers with parchment paper to avoid sticking.
Pro Tip: Always double-check the labels of your ingredients. Gluten can hide in unexpected places, so look for certified gluten-free options whenever possible!
By following these guidelines, you can create delicious gluten-free cheesecake cupcakes that everyone will love. Enjoy experimenting with different flavors and combinations to find your perfect mini dessert!
2. Chocolate Chip Cookie Dough Cheesecake Cupcakes

Who can resist the combination of cookie dough and cheesecake? These cupcakes bring together the best of both worlds, making them a crowd favorite! With a gluten-free cookie dough base topped with creamy cheesecake, they are sure to delight anyone who loves sweets.
Each bite is rich and satisfying, with cookie dough chunks adding a fun texture. Perfect for parties or a well-deserved treat at home!
Ingredients:
– For the cookie dough:
– ½ cup gluten-free flour
– ½ cup brown sugar
– ¼ cup granulated sugar
– ½ cup unsalted butter (softened)
– 1 teaspoon vanilla extract
– ½ teaspoon salt
– ½ cup gluten-free chocolate chips
– For the cheesecake:
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 1 teaspoon vanilla extract
– 3 large eggs
Instructions:
1. Preheat the oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. In a bowl, combine gluten-free flour, brown sugar, granulated sugar, softened butter, vanilla extract, and salt to create the cookie dough. Mix in chocolate chips.
3. Press a small amount of cookie dough into the bottom of each cupcake liner.
4. In another bowl, beat cream cheese and sugar until smooth. Add vanilla and eggs, mixing until incorporated.
5. Pour the cheesecake batter over the cookie dough crust.
6. Bake for 25 minutes, then let cool before chilling in the refrigerator for at least 2 hours. Top with extra cookie dough just before serving.
FAQs:
– Can I use regular flour for the cookie dough? Yes, but it won’t be gluten-free.
– Can I make it vegan? Use a plant-based cream cheese and egg substitute.
3. Strawberry Swirl Cheesecake Cupcakes

Looking for a delightful treat bursting with fresh flavors? These strawberry swirl cheesecake cupcakes are just the answer! They feature vibrant pink swirls of strawberry that not only look beautiful but also enhance the creamy cheesecake flavor.
Perfect for spring or summer, these mini desserts are a feast for both the eyes and taste buds. They make a lovely addition to any gathering or a sweet indulgence at home.
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 1 teaspoon vanilla extract
– 3 large eggs
– ½ cup strawberry puree (fresh or store-bought)
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. Combine the gluten-free graham cracker crumbs and melted butter, then press into the bottom of each liner.
3. In a bowl, beat cream cheese and sugar until smooth, then add vanilla and eggs, mixing until just combined.
4. Spoon the cheesecake mixture over the crust, filling each liner about ¾ full.
5. Drop spoonfuls of strawberry puree on top of each cupcake and swirl gently with a toothpick or skewer.
6. Bake for 20 minutes, then cool before refrigerating for at least 2 hours. Top with fresh strawberries before serving.
FAQs:
– Can I use frozen strawberries? Yes, just thaw and drain excess liquid before pureeing.
– Can I make it dairy-free? Substitute cream cheese with a dairy-free alternative and use plant-based yogurt.
Fun fact: Those gluten-free cheesecake cupcakes bake in under 20 minutes and cool fast, so you get 12 pretty strawberry swirls in one quick batch. Slice one, and friends will be asking for the recipe, guaranteed.
4. Lemon Zest Cheesecake Cupcakes

In need of a refreshing dessert? These lemon zest cheesecake cupcakes are like sunshine in a cupcake! Perfect for lemon lovers, they offer a tangy flavor that is both refreshing and delightful.
The gluten-free lemon zest adds a lovely aroma to the creamy cheesecake, while the crumbly crust provides a perfect contrast. These mini desserts are ideal for warmer days or when you need a pick-me-up!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 2 tablespoons lemon zest
– 3 large eggs
– ¼ cup freshly squeezed lemon juice
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, then press firmly into each liner.
3. In a mixing bowl, beat the cream cheese and sugar until creamy.
4. Add the lemon zest, lemon juice, and eggs, and beat until fully incorporated.
5. Pour the mixture over the crust in each cupcake liner.
6. Bake for 15 minutes or until set, then cool and refrigerate for at least 2 hours. Top with lemon slices or zest before serving.
FAQs:
– Can I use bottled lemon juice? Fresh juice will provide the best flavor.
– Can I make it sugar-free? Use a sugar substitute that measures like sugar.
📹 Related Video: Lemon Cheesecake Cupcakes-How To Make Lemon Cheesecake Cupcakes-Lemon Curd-Graham Cracker Crust
5. Pumpkin Spice Cheesecake Cupcakes

Embrace the cozy flavors of fall with these pumpkin spice cheesecake cupcakes! Combining creamy cheesecake with the warm spices of pumpkin pie, they are a seasonal favorite.
The gluten-free crust adds a delightful crunch that balances the silky filling, making every bite comforting and delicious. Perfect for Thanksgiving or cozy gatherings, these mini desserts will leave you wanting more!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup pumpkin puree
– ¾ cup granulated sugar
– 2 eggs
– 1 teaspoon pumpkin spice
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. In a bowl, mix the gluten-free graham cracker crumbs with melted butter and press into the bottom of each liner.
3. In a large bowl, beat cream cheese and sugar until smooth, then add pumpkin, eggs, and pumpkin spice. Mix until well combined.
4. Fill each cupcake liner with the pumpkin cheesecake mixture.
5. Bake for 20 minutes, then let cool before refrigerating for at least 2 hours before serving. Top with whipped cream and a sprinkle of cinnamon.
FAQs:
– Can I use canned pumpkin? Yes, just ensure it’s pure pumpkin puree.
– Can I make it dairy-free? Use a dairy-free cream cheese alternative.
6. Peanut Butter Swirl Cheesecake Cupcakes

Peanut butter lovers, rejoice! These peanut butter swirl cheesecake cupcakes are a decadent treat you won’t want to miss. Combining rich cheesecake with creamy peanut butter, they are both delightful and satisfying.
The gluten-free crust provides a perfect base for the swirls of peanut butter that blend beautifully into the cheesecake. Great for a special occasion or a simple dessert at home, they’ll satisfy your sweet tooth!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup creamy peanut butter
– ¾ cup granulated sugar
– 3 large eggs
– ½ cup peanut butter for swirling
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. Combine gluten-free graham cracker crumbs and melted butter, then press into each liner to form the crust.
3. In a bowl, beat cream cheese and sugar until smooth. Add peanut butter and eggs, mixing until well combined.
4. Fill the cupcake liners with the cheesecake batter, then add spoonfuls of peanut butter on top and swirl gently with a toothpick.
5. Bake for 20 minutes, then cool completely before chilling in the refrigerator for at least 2 hours.
FAQs:
– Can I use crunchy peanut butter? Yes, it will add more texture.
– Can I make it vegan? Use a plant-based cream cheese and egg substitute.
7. Raspberry Lemonade Cheesecake Cupcakes

Ready for a refreshing flavor burst? These raspberry lemonade cheesecake cupcakes are perfect for warm weather! Bursting with tart raspberry and zesty lemonade flavors, they are a delightful treat.
The gluten-free crust pairs beautifully with the creamy cheesecake filling, while the tart raspberry topping adds a refreshing twist. Great for summer gatherings, they’ll impress your guests with their vibrant flavors!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup raspberry puree
– 2 tablespoons lemonade (freshly squeezed)
– 2 large eggs
Instructions:
1. Preheat the oven to 325°F (160°C) and prepare a muffin tin with liners.
2. Combine gluten-free graham cracker crumbs and melted butter, pressing firmly into each liner to form the crust.
3. In a bowl, beat cream cheese and sugar until smooth. Add raspberry puree, lemonade, and eggs, mixing until just combined.
4. Pour the cheesecake mixture over the crust, filling each cup about ¾ full.
5. Bake for 20 minutes, then let cool completely before refrigerating for at least 2 hours. Garnish with fresh raspberries before serving.
FAQs:
– Can I use frozen raspberries? Yes, just thaw and drain before pureeing.
– Can I make it sugar-free? Substitute granulated sugar with a sugar alternative.
Gluten-free doesn’t mean dull dessert—these raspberry lemonade cheesecake cupcakes prove summer treats can sparkle. Tart raspberry, sunny lemonade, creamy filling—it’s the perfect crowd-pleaser for warm weather.
8. Caramel Pecan Cheesecake Cupcakes

Indulge in these caramel pecan cheesecake cupcakes that blend rich caramel with crunchy pecans! The combination of creamy cheesecake and sweet caramel is heavenly.
These gluten-free treats are perfect for satisfying sweet cravings and are sure to be a hit at any gathering. With delightful textures and flavors, you might find it hard to stop at just one!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup chopped pecans
– ½ cup caramel sauce
– 3 large eggs
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, then press into each liner to form a crust.
3. In a bowl, beat cream cheese and sugar until creamy, then add eggs and mix until smooth.
4. Fold in chopped pecans and caramel sauce, mixing gently.
5. Fill each cupcake liner with the mixture and bake for 20 minutes. Cool completely before refrigerating for at least 2 hours. Drizzle with extra caramel sauce before serving.
FAQs:
– Can I use walnuts instead of pecans? Yes, walnuts are a great alternative!
– Can I make it nut-free? Omit the pecans and use a different crust.
Caramel and pecans make gluten-free cheesecake cupcakes irresistibly creamy—proof that dessert can be decadent and doable. Bake a batch, share the joy, and freeze leftovers for quick, crave-worthy treats.
9. Mint Chocolate Cheesecake Cupcakes

If you love chocolate and mint, these mint chocolate cheesecake cupcakes are a must-try! The rich chocolate paired with refreshing mint creates a unique flavor profile.
With a gluten-free crust and a generous swirl of mint chocolate topping, they’re perfect for any occasion, especially during the holidays. These mini desserts are sure to impress mint-chocolate lovers!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup unsweetened cocoa powder
– 3 large eggs
– 1 teaspoon peppermint extract
– ½ cup chocolate chips for topping
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter and press them into the bottom of each liner.
3. In a mixing bowl, beat cream cheese and sugar until smooth. Combine cocoa powder and eggs, mixing well. Add peppermint extract and mix again.
4. Fill each cupcake liner with the chocolate cheesecake mixture and top with chocolate chips.
5. Bake for 20 minutes, then cool before refrigerating for at least 2 hours. Top with whipped cream and a dusting of cocoa before serving.
FAQs:
– Can I use dark chocolate instead of cocoa powder? Yes, but adjust the sweetness accordingly.
– Can I make it vegan? Use a plant-based cream cheese and egg substitute.
10. White Chocolate Raspberry Cheesecake Cupcakes

Treat yourself to these luxurious white chocolate raspberry cheesecake cupcakes! The creamy sweetness of white chocolate combined with tart raspberries creates a divine flavor experience.
The gluten-free crust provides a sturdy base for the silky filling, while fresh raspberries add a beautiful burst of color. Perfect for special occasions, these mini cupcakes will leave a lasting impression on your guests!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup white chocolate (melted)
– 1 cup granulated sugar
– ½ cup fresh raspberries
– 3 large eggs
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. In a bowl, mix the gluten-free graham cracker crumbs and melted butter, then press into the bottom of each liner.
3. In a mixing bowl, beat cream cheese and sugar until smooth. Mix in melted white chocolate and eggs until well combined.
4. Fold in fresh raspberries gently, then pour the cheesecake mixture over the crust in each cupcake liner.
5. Bake for 20 minutes, then cool before refrigerating for at least 2 hours. Top with white chocolate shavings before serving.
FAQs:
– Can I use frozen raspberries? Yes, just make sure to thaw and drain excess moisture before adding.
– Can I make it nut-free? Ensure all ingredients are free from cross-contamination.
11. Choco-Matcha Marble Cheesecake Cupcakes

Ready to try something unique? These choco-matcha marble cheesecake cupcakes are a delightful blend of chocolate and green tea flavors! The earthy matcha taste pairs harmoniously with the sweetness of chocolate.
Not only are they visually stunning with their marbled appearance, but they also provide a perfect balance of flavors for an exciting dessert option. Great for any dessert platter or as an afternoon treat!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup unsweetened cocoa powder
– 1 tablespoon matcha powder
– 3 large eggs
Instructions:
1. Preheat the oven to 325°F (160°C) and prepare a muffin tin with liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, then press into each liner.
3. In one bowl, beat cream cheese and sugar until smooth. Divide the mixture into two.
4. Add cocoa powder to one half and matcha powder to the other half, mixing until incorporated.
5. Alternate spoonfuls of each batter into the cupcake liners, swirling gently with a toothpick to create a marbled effect.
6. Bake for 20 minutes, let cool, and refrigerate for at least 2 hours before serving.
FAQs:
– Can I use green tea instead of matcha? Matcha gives the best flavor and color.
– Can I make it vegan? Use plant-based cream cheese and egg substitutes.
12. Almond Joy Cheesecake Cupcakes

Love Almond Joy candies? These cupcakes are your dream come true! Combining chocolate, coconut, and almond flavors, they deliver everything you adore about the candy bar in a creamy, gluten-free cupcake.
Perfect for satisfying your sweet cravings, these mini desserts are a delightful indulgence for gatherings. The blend of textures and flavors makes them a nostalgic treat everyone will cherish!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ¼ cup shredded coconut
– ½ cup mini chocolate chips
– 3 large eggs
– ¼ cup chopped almonds for topping
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, then press into the bottom of each liner.
3. In a bowl, beat cream cheese and sugar until smooth, then add eggs and mix until combined.
4. Stir in shredded coconut and mini chocolate chips, mixing well.
5. Pour the batter into the cupcake liners and bake for 20 minutes.
6. Cool and refrigerate for at least 2 hours. Before serving, top with chopped almonds and a drizzle of chocolate sauce.
FAQs:
– Can I use sweetened coconut? Yes, but it may affect the overall sweetness.
– Can I make it without nuts? Simply omit the almonds and use a different topping.
13. S’mores Cheesecake Cupcakes

Bring campfire vibes indoors with these s’mores cheesecake cupcakes! Combining chocolate, marshmallows, and graham crackers, these gluten-free treats offer a fun way to enjoy a classic summer dessert all year round.
Each cupcake features a chocolate cheesecake filling, topped with a toasted marshmallow and a sprinkle of graham cracker crumbs. Fun and delicious, they’re perfect for parties or a cozy evening at home!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup unsweetened cocoa powder
– 3 large eggs
– 1 cup mini marshmallows for topping
Instructions:
1. Preheat your oven to 325°F (160°C) and line a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, pressing it into each liner for the crust.
3. In a bowl, beat cream cheese and sugar until smooth, then mix in cocoa powder and eggs until well combined.
4. Divide the mixture among the cupcake liners, filling them about ¾ full.
5. Bake for 20 minutes, then cool completely before refrigerating for at least 2 hours. Top with mini marshmallows and a quick blast with a kitchen torch to toast before serving.
FAQs:
– Can I use regular marshmallows? Yes, but mini marshmallows are easier to toast.
– Can I make it dairy-free? Use dairy-free cream cheese and a non-dairy chocolate alternative.
14. Tiramisu Cheesecake Cupcakes

Indulge in a dessert that combines rich tiramisu flavors with creamy cheesecake in these delightful cupcakes! With layers of coffee and cocoa, they offer a delightful twist on a classic.
Perfect for anyone who appreciates the elegance of tiramisu, these gluten-free cupcakes are great for parties or a sophisticated treat at home!
Ingredients:
– 1 ½ cups gluten-free ladyfinger crumbs (or gluten-free graham cracker crumbs)
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup brewed coffee (cooled)
– 3 large eggs
– 2 tablespoons cocoa powder for dusting
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Mix gluten-free ladyfinger crumbs with melted butter, and press into the bottom of each liner for the crust.
3. In a bowl, beat cream cheese and sugar until smooth. Mix in brewed coffee and eggs.
4. Pour the cheesecake batter over the crust in each cupcake liner.
5. Bake for 20 minutes, then cool completely before refrigerating for at least 2 hours. Dust with cocoa powder before serving.
FAQs:
– Can I use instant coffee? Yes, just dissolve it in water as directed.
– Can I make it without eggs? Yes, substitute with an egg replacement of your choice.
15. Funfetti Cheesecake Cupcakes

Celebrate every day with these festive funfetti cheesecake cupcakes! Bursting with colorful sprinkles, they add a playful touch to any occasion. Perfect for birthdays or just a sweet treat, these mini cupcakes are as fun to make as they are to eat.
The gluten-free crust pairs perfectly with the creamy cheesecake, and the addition of sprinkles brings a smile to everyone’s face. Whether hosting a party or enjoying a quiet night in, these cupcakes are sure to brighten your day!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 3 large eggs
– ½ cup colorful sprinkles
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Combine gluten-free graham cracker crumbs and melted butter, pressing into each liner to form a crust.
3. In a mixing bowl, beat cream cheese and sugar until creamy. Add eggs and mix until smooth, then fold in colorful sprinkles.
4. Pour the cheesecake batter into each cupcake liner and bake for 20 minutes. Cool before refrigerating for at least 2 hours. Top with additional sprinkles before serving.
FAQs:
– Can I use any type of sprinkles? Yes, any colorful sprinkles will work!
– Can I make it dairy-free? Use dairy-free cream cheese for the filling.
16. Coconut Cream Cheesecake Cupcakes

Take your taste buds on a tropical vacation with these coconut cream cheesecake cupcakes! The smooth creaminess of the cheesecake combined with shredded coconut creates a delightful flavor that will transport you straight to the beach.
These gluten-free cupcakes are perfect for summer gatherings or anytime you crave a sweet escape. They’re deliciously light and refreshing, and every bite will leave you dreaming of sandy shores!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– ½ cup shredded coconut
– 3 large eggs
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Mix gluten-free graham cracker crumbs with melted butter and press into each liner for the crust.
3. In a bowl, beat cream cheese and sugar until smooth. Stir in shredded coconut and eggs one at a time until well blended.
4. Pour the mixture into the cupcake liners and bake for 20 minutes. Cool completely before refrigerating for at least 2 hours. Top with whipped cream and additional coconut before serving.
FAQs:
– Can I use sweetened shredded coconut? Yes, it will add more sweetness.
– Can I make it nut-free? Ensure all ingredients are free from cross-contamination.
17. Blueberry Cheesecake Cupcakes

Last but certainly not least, these blueberry cheesecake cupcakes are bursting with fruity goodness! Sweet and tangy blueberries complement the creamy cheesecake, creating a deliciously balanced flavor in every bite.
The gluten-free crust supports the rich filling, and they’re perfect for any occasion, from summer picnics to cozy evenings at home. These mini desserts are a fantastic way to enjoy the fresh taste of blueberries in a delightful cheesecakey form!
Ingredients:
– 1 ½ cups gluten-free graham cracker crumbs
– ½ cup unsalted butter (melted)
– 2 cups cream cheese (softened)
– 1 cup granulated sugar
– 1 cup fresh blueberries
– 3 large eggs
Instructions:
1. Preheat your oven to 325°F (160°C) and prepare a muffin tin with cupcake liners.
2. Mix the gluten-free graham cracker crumbs and melted butter, pressing into each liner to form a crust.
3. In a bowl, beat cream cheese and sugar until smooth, then mix in eggs and fresh blueberries until just combined.
4. Pour the cheesecake mixture into the cupcake liners and bake for 20 minutes. Cool completely before refrigerating for at least 2 hours. Top with additional blueberries before serving.
FAQs:
– Can I use frozen blueberries? Yes, just thaw and drain before mixing.
– Can I make it vegan? Use plant-based cream cheese and egg substitutes.
Conclusion

These 17 cheesecake cupcake recipes bring a world of flavor and creativity to your dessert table. Whether you’re hosting a party or enjoying a cozy night in, these delicious mini treats are sure to please. From classic flavors to adventurous combinations, there’s something for everyone to enjoy. Get ready to bake, indulge, and share these decadent desserts with friends and family!
Frequently Asked Questions
What makes a great gluten-free cheesecake cupcakes recipe, and how can I keep them creamy?
To nail a gluten-free cheesecake cupcakes recipe, start with room-temperature ingredients for easy mixing: cream cheese, sugar, eggs, vanilla, and a little sour cream for extra creaminess. Choose a crust option like almond-flour crust or gluten-free cookie crumbs. Bake in a muffin tin with liners and a water bath at 325°F (165°C) for about 18–22 minutes, until the centers are just set. Let the cupcakes cool completely, then refrigerate at least 2 hours before serving for the best texture. Avoid overmixing after you add the eggs to keep them smooth and creamy. If you want dairy-free, swap with a dairy-free cream cheese and dairy-free yogurt while keeping the gluten-free crust.
What are some easy gluten-free cheesecake cupcake ideas I can try as mini desserts?
Here are a few crowd-pleasing cupcake ideas that stay gluten-free and satisfy cravings for mini desserts: classic vanilla bean with a lemon zest swirl, chocolate ganache-topped chocolate cheesecake, strawberry-swirl with a gluten-free crust, peanut butter cup-inspired, or raspberry white chocolate. For each, bake the base in muffin cups and top after chilling. Use mini cupcake liners and adjust bake times to 15–20 minutes. Finish with toppings like fruit compote, whipped cream, or a dusting of cocoa powder. These variations keep the dessert recipes exciting while staying gluten-free.
How can I customize cheesecake variations into different dessert recipes using these cupcakes?
Experiment with flavors by adding extracts (lemon, almond, vanilla), zest, or cocoa to the filling. Try different toppings: berry compotes, caramel, chocolate ganache, or crushed nuts. For crust variations, mix in almond flour, chopped nuts, or gluten-free cookies. Swap fillings to create chocolate, cookie-dough, or espresso flavors. These cheesecake variations turn simple cupcakes into a versatile base for various dessert recipes and cupcake ideas.
Can I make gluten-free cheesecake cupcakes ahead of time and still keep them creamy?
Yes, you can prep ahead: bake and chill the cupcakes, then store in the fridge for up to 4 days. For longer storage, freeze unfrosted or fully assembled cupcakes for 1–2 months; thaw in the fridge before serving. If topping with fresh fruit, add topping just before serving to keep things vibrant. Refrigeration helps the filling set and stay creamy longer, making them perfect for parties or meal prep.
What tools and substitutions help me bake gluten-free cheesecake cupcakes perfectly?
Use a standard muffin tin with paper liners or silicone liners for easy removal, plus a small water bath to prevent cracking. An electric mixer or stand mixer makes beating the cream cheese smooth and airy. Substitutions: gluten-free crust options such as almond flour crust or gluten-free cookies; for sweeteners, granulated sugar or coconut sugar; dairy-free options include dairy-free cream cheese and yogurt if needed. For consistency, weigh ingredients when possible, keep everything at room temperature, and avoid overmixing. These tips help achieve a creamy cupcakes texture in a cheesecake cupcakes recipe.





